PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00411.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 518aa    MW: 56844.3 Da    PI: 7.3254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00411.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32.1e-19177224148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WTt+Ed+llv+ v+q+G g+W++++++ g++R++k+c++rw +yl
  Zpz_sc00411.1.g00050.1.am.mk 177 KGPWTTQEDKLLVEHVQQHGEGRWNSVSKHTGLKRSGKSCRLRWVNYL 224
                                   79********************************************97 PP

2Myb_DNA-binding537.7e-17230274147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Zpz_sc00411.1.g00050.1.am.mk 230 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 274
                                   8999******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.614172224IPR017930Myb domain
SuperFamilySSF466892.13E-29175271IPR009057Homeodomain-like
SMARTSM007179.3E-17176226IPR001005SANT/Myb domain
PfamPF002495.4E-18177224IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-23178231IPR009057Homeodomain-like
CDDcd001674.85E-12179224No hitNo description
PROSITE profilePS5129425.396225279IPR017930Myb domain
SMARTSM007176.6E-16229277IPR001005SANT/Myb domain
PfamPF002492.4E-14230274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-23232277IPR009057Homeodomain-like
CDDcd001672.42E-10234275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
LAGPLSRAEE DDDDDASLGL VIRWRDREAP GGVGEELESA RTALRKVKEV VVVVCGGSKL  60
REGNTHTPYV HRASSTSPVT ARQLRTCPSG QVPWMREPAS SWGLGRGLRR GGERLGETSS  120
PVPHIYAAAA HSSLIVRQHK RKERRAASPA SRPWIDIHEL TEGQLAWGGR EVDGWRKGPW  180
TTQEDKLLVE HVQQHGEGRW NSVSKHTGLK RSGKSCRLRW VNYLRPDLKR GKITPQEESI  240
IVQLHALWGN RWSTIARSLP GRTDNEIKNY WRTHFKKGKP SKNIERARAR FLKQRREMQI  300
QQQQQLQQLV SKVDENTNHD DGATRCGTLV EAEDRGSAVV DNACAGTTAA AVTDQSSGQH  360
HQAAAPDLAM HDAMMDFMCP MSCGLLLHGA GAHQGGASAG SCCGSTSEEY GSSEEDGATW  420
GSLWNLEDVV GDGGGPGAYA SGWASEIDPN FPSTNDLHAL NEVGEETEVD SERGGRELVA  480
RTSAHRLILR LPWWWWITTS EQPLPYFHFA AAAAAGAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2617727727126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096201e-128AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978126.11e-117PREDICTED: transcription repressor MYB6-like
TrEMBLK3Y9D01e-117K3Y9D0_SETIT; Uncharacterized protein
STRINGSi010822m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.14e-62myb domain protein 79